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SRX14087916: GSM5870447: 452_Wang_input_BWX5341_CH_20uMIPTG1h; Bacillus subtilis PY79; ChIP-Seq
1 ILLUMINA (NextSeq 550) run: 2M spots, 164.8M bases, 66.7Mb downloads

External Id: GSM5870447_r1
Submitted by: Biology Building 225, Biology, Indiana University at Bloomington
Study: Centromere interactions promote the maintenance of the multipartite genome in Agrobacterium tumefaciens
show Abstracthide Abstract
Many pathogens and symbionts contain multipartite genomes, but how they are stably maintained is poorly understood. The plant pathogen, Agrobacterium tumefaciens, contains four replicons. Recent work indicates that their replication origins cluster at cell poles in a manner that depends on their ParB-family centromeric proteins. Here, we provide evidence that centromeric clustering is mediated by interactions between these centromeric proteins. We further show that the disruption of centromere clustering results in the loss of replicons. Our data establish the role of centromeric clustering in multipartite genome maintenance. Overall design: Hi-C and ChIP-seq experiments were performed on wild type and mutant cells of Agrobacterium tumefaciens C58 or 15955 growing in LB, ATGN and mutant cells of Bacillus subtilis PY79 growing in rich media.
Sample: 452_Wang_input_BWX5341_CH_20uMIPTG1h
SAMN25721226 • SRS11913561 • All experiments • All runs
Library:
Name: GSM5870447
Instrument: NextSeq 550
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: PAIRED
Construction protocol: Hi-C experiments were performed using HindIII according to previous publications (Le et al, 2013, PMID: 24158908; Wang et al 2015, PMID: 26253537). ChIP-seq experiments were performed using anti-GFP, anti-mCherry antibodies according to previous publication (Graham et al 2014, PMID: 24829297). Standard library construction protocol was used for Illumina Nextseq550 sequencing platforms. Illumina Truseq indexes were used.
Runs: 1 run, 2M spots, 164.8M bases, 66.7Mb
Run# of Spots# of BasesSizePublished
SRR179294961,962,302164.8M66.7Mb2022-04-28

ID:
19842969

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